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  5. Sro369_g128230.1

Sro369_g128230.1 (Contig1690.g15146)


Aliases : Contig1690.g15146

Description : Helicase


Gene families : OG_01_0000030 (OrthoFinder) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro369_g128230.1
Cluster HCCA: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
Sro137_g064350.1 Contig3969.g30450 Helicase 0.03 OrthoFinder
Sro147_g067740.1 Contig246.g2997 Helicase 0.04 OrthoFinder
Sro1568_g283060.1 Contig717.g8279 Helicase 0.03 OrthoFinder
Sro2923_g340340.1 Contig1756.g15591 Helicase 0.04 OrthoFinder
Sro351_g123860.1 Contig4381.g32940 Helicase 0.04 OrthoFinder
Sro472_g149930.1 Contig4323.g32608 Helicase 0.03 OrthoFinder
Sro872_g213960.1 Contig2262.g18778 Helicase 0.04 OrthoFinder
Sro8_g006850.1 Contig89.g998 Helicase 0.02 OrthoFinder
Sro8_g006870.1 Contig89.g1000 Helicase 0.03 OrthoFinder
TP07G05740.1 No alias Helicase-associated [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005114 Helicase_assoc 675 735
IPR005114 Helicase_assoc 597 659
IPR005114 Helicase_assoc 357 414
IPR005114 Helicase_assoc 439 505
IPR005114 Helicase_assoc 524 585
No external refs found!