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  5. Sro368_g128060.1

Sro368_g128060.1 (Contig2761.g22245)


Aliases : Contig2761.g22245

Description : ISWI chromatin-remodeling complex ATPase ISW2


Gene families : OG_01_0000285 (OrthoFinder) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro368_g128060.1
Cluster HCCA: Cluster_342

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021760.3 tig00021760_g23432.t1 Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre03.g189000 30787481 Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder
Cre10.g430950 30790110 Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder
Cz11g25260.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.02 OrthoFinder
EOD16796 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD21201 No alias SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD37408 No alias SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD38972 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
OT_09G01280.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
Sro795_g203520.1 Contig372.g5045 DNA repair and recombination protein RAD54-like (Fragment) 0.02 OrthoFinder
XM_002499964.1 MICPUN_99013, 99013 SNF2 super family (RAD54B) 0.01 OrthoFinder
XM_002502147.1 MICPUN_58699, 58699 SNF2 super family 0.01 OrthoFinder
XM_002508265.1 MICPUN_60933, 60933 SNF2 super family (RAD54) 0.01 OrthoFinder
lcl|BLLF01001512.1_cds_GFH19731.1_14208 HaLaN_16732, GFH19731 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493509.1_4271 KAA8493509 DNA repair and recombination protein RAD54B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP Enrichment
BP GO:0000725 recombinational repair IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 1036 1170
IPR000330 SNF2_N 664 965
IPR011124 Znf_CW 1227 1271
No external refs found!