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  5. Sro365_g127370.1

Sro365_g127370.1 (Contig3612.g27911)


Aliases : Contig3612.g27911

Description : Tylosin resistance ATP-binding protein TlrC


Gene families : OG_01_0000132 (OrthoFinder) Phylogenetic Tree(s): OG0000132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro365_g127370.1
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000383.51 tig00000383_g24665.t1 ABC transporter F family member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00020629.98 tig00020629_g12419.t1 ABC transporter F family member 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre01.g023787 30789637 ABC transporter F family member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre01.g034950 30788752 ABC transporter F family member 4 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre11.g467781 30775790 ABC transporter F family member 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz03g13130.t1 No alias ABC-transporter extension domain; ABC transporter-like... 0.05 OrthoFinder
Cz07g32170.t1 No alias ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
EOD04357 No alias ABC transporter protein [Ensembl]. 0.02 OrthoFinder
OT_05G02420.1 No alias ABC-transporter extension domain; ABC transporter-like;... 0.03 OrthoFinder
OT_07G01740.1 No alias ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
OT_15G01840.1 No alias ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
SymbC1.scaffold1583.1 1583.1 ABC transporter-like; Chromo domain; ABC-transporter... 0.01 OrthoFinder
TP01G10170.1 No alias ABC transporter-like; ABC-transporter extension domain... 0.04 OrthoFinder
Transcript_contig_56222 56222 ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
Transcript_contig_78244 78244 ABC-transporter extension domain; ABC transporter-like... 0.01 OrthoFinder
Vocar.0021s0106.1 32895877 ABC-transporter extension domain; ABC transporter-like... 0.01 OrthoFinder
Vocar.0027s0024.1 32887256 ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
XM_002502487.1 MICPUN_58625, 58625 ABC-transporter extension domain; ZC3H15/TMA46 family,... 0.04 OrthoFinder
XM_002503388.1 MICPUN_83355, 83355 ATP-binding cassette superfamily 0.02 OrthoFinder
XM_002505228.1 MICPUN_62615, 62615 ABC transporter 0.03 OrthoFinder
XM_003055665.1 MicpuC2_50666, 50666 ABC transporter/cobalt transport family protein 0.04 OrthoFinder
XM_003060298.1 MicpuC2_60050, 60050 ABC transporter 0.02 OrthoFinder
lcl|BLLF01000100.1_cds_GFH07516.1_1993 HaLaN_02328, GFH07516 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000797.1_cds_GFH15030.1_9507 HaLaN_11184, GFH15030 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61109.1_452 PRW61109 ATP-binding cassette 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498643.1_7596 KAA8498643 ABC transporter F family member 4 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004517 nitric-oxide synthase activity IEP Enrichment
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006000 fructose metabolic process IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
BP GO:0006077 (1->6)-beta-D-glucan metabolic process IEP Enrichment
BP GO:0006078 (1->6)-beta-D-glucan biosynthetic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006809 nitric oxide biosynthetic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046209 nitric oxide metabolic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
BP GO:2001057 reactive nitrogen species metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 490 621
IPR032781 ABC_tran_Xtn 374 443
IPR003439 ABC_transporter-like_ATP-bd 169 332
No external refs found!