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  5. Sro35_g022630.1

Sro35_g022630.1 (Contig3323.g26140)


Aliases : Contig3323.g26140

Description : 26S proteasome regulatory subunit 4


Gene families : OG_01_0002743 (OrthoFinder) Phylogenetic Tree(s): OG0002743_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro35_g022630.1
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001042.6 tig00001042_g6583.t1 Protein degradation.26S proteasome.regulatory... 0.17 OrthoFinder
Cre07.g329700 30774542, RPT2 Protein degradation.26S proteasome.regulatory... 0.35 OrthoFinder
Cz14g00180.t1 No alias AAA ATPase, AAA+ lid domain; Proteasomal ATPase OB... 0.11 OrthoFinder
Dusal.0208s00022.1 33194129 Diaminopimelate epimerase, DapF; ATPase, AAA-type, core;... 0.02 OrthoFinder
EOD21334 No alias Proteasomal ATPase OB C-terminal domain; AAA ATPase,... 0.14 OrthoFinder
PTI_03G00970.1 No alias Proteasomal ATPase OB C-terminal domain; AAA ATPase,... 0.32 OrthoFinder
TP01G06520.1 No alias Proteasomal ATPase OB C-terminal domain; ATPase,... 0.28 OrthoFinder
Transcript_contig_56893 56893 Proteasomal ATPase OB C-terminal domain; ATPase,... 0.06 OrthoFinder
Vocar.0017s0200.1 32891504 Proteasomal ATPase OB C-terminal domain; ATPase,... 0.12 OrthoFinder
XM_002501574.1 MICPUN_106840, 106840 Proteasomal ATPase OB C-terminal domain; AAA ATPase,... 0.17 OrthoFinder
XM_003062509.1 MicpuC2_49715, 49715 Proteasomal ATPase OB C-terminal domain; ATPase,... 0.1 OrthoFinder
lcl|BLLF01000228.1_cds_GFH09364.1_3841 HaLaN_04486, GFH09364 26S proteasome regulatory subunit 0.02 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57564.1_8566 PRW57564 26S proteasome regulatory subunit 4-like protein B 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492200.1_5383 KAA8492200 26S proteasome regulatory subunit 4-like B 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR032501 Prot_ATP_ID_OB 122 176
IPR003959 ATPase_AAA_core 235 368
IPR041569 AAA_lid_3 390 433
No external refs found!