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  5. Sro3517_g348800.1

Sro3517_g348800.1 (Contig2288.g18914)


Aliases : Contig2288.g18914

Description : Hypothetical protein


Gene families : OG_01_0000438 (OrthoFinder) Phylogenetic Tree(s): OG0000438_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro3517_g348800.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Sro100_g051190.1 Contig63.g524 Hypothetical protein 0.06 OrthoFinder
Sro100_g051200.1 Contig63.g525 Hypothetical protein 0.03 OrthoFinder
Sro120_g058520.1 Contig2411.g19730 Hypothetical protein 0.02 OrthoFinder
Sro1224_g254020.1 Contig293.g3826 Hypothetical protein 0.03 OrthoFinder
Sro1252_g256220.1 Contig3295.g25873 Hypothetical protein 0.08 OrthoFinder
Sro1493_g277250.1 Contig1998.g17094 Hypothetical protein 0.07 OrthoFinder
Sro1918_g305350.1 Contig9.g104 Hypothetical protein 0.04 OrthoFinder
Sro254_g100210.1 Contig387.g5216 Hypothetical protein 0.03 OrthoFinder
Sro2623_g332890.1 Contig2538.g20702 Hypothetical protein 0.08 OrthoFinder
Sro275_g105700.1 Contig3464.g26872 Hypothetical protein 0.09 OrthoFinder
Sro280_g107000.1 Contig1076.g10460 Hypothetical protein 0.05 OrthoFinder
Sro3025_g342310.1 Contig3340.g26189 Hypothetical protein 0.09 OrthoFinder
Sro366_g127660.1 Contig1993.g17075 Hypothetical protein 0.05 OrthoFinder
Sro4272_g353590.1 Contig1572.g14259 Hypothetical protein 0.04 OrthoFinder
Sro450_g145600.1 Contig271.g3485 Hypothetical protein 0.03 OrthoFinder
Sro554_g165590.1 Contig3803.g29158 Hypothetical protein 0.03 OrthoFinder
Sro587_g171240.1 Contig2233.g18547 Hypothetical protein 0.04 OrthoFinder
Sro790_g202810.1 Contig4757.g452 Hypothetical protein 0.04 OrthoFinder
Sro858_g211790.1 Contig4009.g30825 Hypothetical protein 0.03 OrthoFinder
Sro903_g218280.1 Contig3909.g29968 Hypothetical protein 0.11 OrthoFinder
Sro95_g049170.1 Contig45.g302 Hypothetical protein 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment

No InterPro domains available for this sequence

No external refs found!