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  5. Sro341_g121570.1

Sro341_g121570.1 (Contig3952.g30289)


Aliases : Contig3952.g30289

Description : Sel1 domain protein repeat-containing protein


Gene families : OG_01_0000179 (OrthoFinder) Phylogenetic Tree(s): OG0000179_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro341_g121570.1
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Sro1011_g230970.1 Contig997.g10070 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro1011_g231050.1 Contig997.g10078 SAM and U-box domain-containing protein 1 0.05 OrthoFinder
Sro1154_g247120.1 Contig2345.g19268 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro1215_g253210.1 Contig2655.g21465 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro1311_g261780.1 Contig1682.g15105 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro1438_g272650.1 Contig3435.g26744 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro1531_g280130.1 Contig2576.g20919 U box domain [Interproscan]. 0.03 OrthoFinder
Sro3_g002900.1 Contig3832.g29475 Sel1 domain protein repeat-containing protein 0.07 OrthoFinder
Sro5_g004510.1 Contig4001.g30766 Hypothetical protein 0.05 OrthoFinder
Sro639_g179810.1 Contig197.g2302 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro65_g036920.1 Contig155.g1762 Hypothetical protein 0.04 OrthoFinder
Sro65_g036930.1 Contig155.g1763 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro792_g203190.1 Contig385.g5187 Sel1 domain protein repeat-containing protein 0.05 OrthoFinder
Sro793_g203310.1 Contig534.g6939 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro820_g207210.1 Contig34.g203 Sel1 domain protein repeat-containing protein 0.02 OrthoFinder
Sro870_g213590.1 Contig1807.g15929 Sel1 domain protein repeat-containing protein 0.06 OrthoFinder
Sro963_g225240.1 Contig3377.g26425 Sel1 domain protein repeat-containing protein 0.04 OrthoFinder
Sro963_g225290.2 No alias U box domain; Sel1-like repeat [Interproscan]. 0.02 OrthoFinder
Sro963_g225330.1 Contig3377.g26434 ERAD-associated E3 ubiquitin-protein ligase component 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
InterPro domains Description Start Stop
IPR006597 Sel1-like 90 119
IPR006597 Sel1-like 15 51
IPR006597 Sel1-like 58 86
No external refs found!