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  5. Sro339_g121110.1

Sro339_g121110.1 (Contig3791.g29117)


Aliases : Contig3791.g29117

Description : Protein L28, chloroplastic


Gene families : OG_01_0004076 (OrthoFinder) Phylogenetic Tree(s): OG0004076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro339_g121110.1
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Cre06.g265800 30779397, PRPL28 Protein biosynthesis.organelle translation... 0.1 OrthoFinder
Cz10g11070.t1 No alias Ribosomal protein L28/L24 [Interproscan]. 0.06 OrthoFinder
OT_03G03000.1 No alias Ribosomal protein L28/L24 [Interproscan]. 0.08 OrthoFinder
PTI_07G02030.1 No alias Ribosomal protein L28/L24 [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold4683.2 4683.2 Ribosomal protein L28/L24 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_55901 55901 Ribosomal protein L28/L24 [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0214.1 32890627 Ribosomal protein L28/L24 [Interproscan]. 0.03 OrthoFinder
XM_002501193.1 MICPUN_57559, 57559 Ribosomal protein L28/L24 [Interproscan]. 0.03 OrthoFinder
XM_003062275.1 MicpuC2_52044, 52044 Ribosomal protein L28/L24 [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56591.1_9479 PRW56591 50S ribosomal L28 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 48 107
No external refs found!