Sro339_g120980.1 (Contig3791.g29104)

Aliases : Contig3791.g29104

Description : Ribosylation factor 1

Gene families : OG_01_0000272 (OrthoFinder) Phylogenetic Tree(s): OG0000272_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sro339_g120980.1
Cluster	HCCA: Cluster_204

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g535900	30792839, ARL1	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	OrthoFinder
Cz02g22080.t1	No alias	Small GTPase superfamily, ARF/SAR type [Interproscan].	0.01	OrthoFinder
TP01G10350.1	No alias	Small GTPase superfamily, ARF/SAR type [Interproscan].	0.02	OrthoFinder
TP17G01490.1	No alias	Small GTPase superfamily, ARF/SAR type [Interproscan].	0.02	OrthoFinder
Vocar.0043s0071.1	32886888	Small GTPase superfamily, ARF/SAR type [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01002018.1_cds_GFH22339.1_16816	HaLaN_19791, GFH22339	Small GTPase superfamily, ARF/SAR type [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Enrichment
MF	GO:0004519	endonuclease activity	IEP	Enrichment
MF	GO:0004521	endoribonuclease activity	IEP	Enrichment
MF	GO:0004540	ribonuclease activity	IEP	Enrichment
MF	GO:0004615	phosphomannomutase activity	IEP	Enrichment
MF	GO:0005509	calcium ion binding	IEP	Enrichment
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Enrichment
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Enrichment
BP	GO:0009298	GDP-mannose biosynthetic process	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
MF	GO:0016859	cis-trans isomerase activity	IEP	Enrichment
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Enrichment
BP	GO:0019673	GDP-mannose metabolic process	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006689	Small_GTPase_ARF/SAR	6	178

External Links

No external refs found!