1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro3288_g346250.1

Sro3288_g346250.1 (Contig2970.g23594)


Aliases : Contig2970.g23594

Description : Retinal-specific ATP-binding cassette transporter


Gene families : OG_01_0000157 (OrthoFinder) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro3288_g346250.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cre03.g151400 30787934 Solute transport.primary active transport.ABC... 0.01 OrthoFinder
Cre14.g613950 30776402 ABC transporter A family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz04g10210.t1 No alias ABC transporter-like; ABC-2 family transporter protein... 0.01 OrthoFinder
EOD37674 No alias ATP-binding cassette transporter [Ensembl]. 0.01 OrthoFinder
EOD37675 No alias ABC-2 family transporter protein; ABC transporter-like... 0.01 OrthoFinder
PTI_24G01170.1 No alias ABC-2 family transporter protein; ABC transporter-like... 0.01 OrthoFinder
XM_002500671.1 MICPUN_57369, 57369 ATP-binding cassette superfamily 0.01 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44292.1_2126 PRW44292 ABC transporter A family member 7-like isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006810 transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 548 710
No external refs found!