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  5. Sro325_g117780.1

Sro325_g117780.1 (Contig3568.g27567)


Aliases : Contig3568.g27567

Description : Respiration control sensor protein ArcB


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro325_g117780.1
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000190.17 tig00000190_g13838.t1 Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.02 OrthoFinder
Cpa|evm.model.tig00021682.12 tig00021682_g23102.t1 No description available 0.02 OrthoFinder
Sro1435_g272380.1 Contig4058.g31114 Hybrid signal transduction histidine kinase J 0.03 OrthoFinder
Sro1556_g282210.1 Contig457.g6172 Hybrid signal transduction histidine kinase J 0.04 OrthoFinder
Sro156_g070980.1 Contig473.g6436 Sensor protein kinase WalK (Fragment) 0.04 OrthoFinder
Sro168_g074900.1 Contig1642.g14821 Sensor kinase/phosphatase LuxQ 0.03 OrthoFinder
Sro1908_g304730.1 Contig1938.g16673 Peroxide stress-activated histidine kinase mak2 0.03 OrthoFinder
Sro20_g014160.1 Contig2954.g23446 Peroxide stress-activated histidine kinase mak2 0.09 OrthoFinder
Sro2185_g318140.1 Contig1553.g14129 Peroxide stress-activated histidine kinase mak2 0.03 OrthoFinder
Sro28_g018500.1 Contig404.g5459 Sensor protein kinase WalK (Fragment) 0.04 OrthoFinder
Sro351_g124000.1 Contig4381.g32954 Respiration control sensor protein ArcB 0.06 OrthoFinder
Sro369_g128120.1 Contig1690.g15135 Hybrid signal transduction histidine kinase J 0.03 OrthoFinder
Sro419_g139190.1 Contig4415.g33180 Sensor kinase/phosphatase LuxQ 0.03 OrthoFinder
Sro419_g139200.1 Contig4415.g33181 Histidine kinase 0.03 OrthoFinder
Sro431_g141430.1 Contig2042.g17546 Histidine kinase 0.05 OrthoFinder
Sro508_g156640.1 Contig2824.g22619 Hybrid signal transduction histidine kinase K 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006189 CHASE_dom 148 291
IPR001789 Sig_transdc_resp-reg_receiver 760 874
IPR003594 HATPase_C 597 706
No external refs found!