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  5. Sro3160_g344630.1

Sro3160_g344630.1 (Contig438.g5893)


Aliases : Contig438.g5893

Description : Hypothetical protein


Gene families : OG_01_0000172 (OrthoFinder) Phylogenetic Tree(s): OG0000172_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro3160_g344630.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
Sro1077_g238550.1 Contig4562.g34082 Hypothetical protein 0.03 OrthoFinder
Sro1351_g265280.1 Contig2702.g21771 Hypothetical protein 0.02 OrthoFinder
Sro149_g068550.1 Contig259.g3223 Hypothetical protein 0.07 OrthoFinder
Sro1698_g291940.1 Contig1874.g16366 Hypothetical protein 0.12 OrthoFinder
Sro1698_g291960.1 Contig1874.g16368 Hypothetical protein 0.11 OrthoFinder
Sro1870_g302680.1 Contig3934.g30160 Hypothetical protein 0.03 OrthoFinder
Sro1900_g304230.1 Contig3998.g30692 Hypothetical protein 0.04 OrthoFinder
Sro1904_g304560.1 Contig2590.g21027 Transcription activator GCR1-like domain [Interproscan]. 0.08 OrthoFinder
Sro227_g092310.1 Contig327.g4343 Hypothetical protein 0.05 OrthoFinder
Sro42_g025520.1 Contig312.g4129 Hypothetical protein 0.06 OrthoFinder
Sro436_g142710.1 Contig228.g2759 Hypothetical protein 0.07 OrthoFinder
Sro4503_g354160.1 Contig4238.g32111 Hypothetical protein 0.03 OrthoFinder
Sro63_g035820.1 Contig2778.g22347 Hypothetical protein 0.13 OrthoFinder
Sro722_g192800.1 Contig2490.g20400 Hypothetical protein 0.05 OrthoFinder
Sro817_g206910.1 Contig4010.g30855 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment

No InterPro domains available for this sequence

No external refs found!