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  5. Sro3107_g343870.1

Sro3107_g343870.1 (Contig3732.g28628)


Aliases : Contig3732.g28628

Description : TIC 55, chloroplastic


Gene families : OG_01_0000145 (OrthoFinder) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro3107_g343870.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000681.17 tig00000681_g3064.t1 Protein TIC 55, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre17.g724700 30782195, PAO1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD18184 No alias Pheophorbide a oxygenase; Rieske [2Fe-2S] iron-sulphur... 0.02 OrthoFinder
EOD42110 No alias Pheophorbide a oxygenase; Rieske [2Fe-2S] iron-sulphur... 0.02 OrthoFinder
PTI_32G00320.1 No alias Pheophorbide a oxygenase; Rieske [2Fe-2S] iron-sulphur... 0.02 OrthoFinder
XM_002499415.1 MICPUN_56398, 56398 Chloroplast envelope protein translocase family (TIC55-1) 0.02 OrthoFinder
XM_002503803.1 MICPUN_59870, 59870 Chloroplast envelope protein translocase family (TIC55-4) 0.02 OrthoFinder
lcl|BLLF01000594.1_cds_GFH13284.1_7761 HaLaN_09136, GFH13284 Pheophorbide a oxygenase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEA Interproscan
MF GO:0051537 2 iron, 2 sulfur cluster binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051180 vitamin transport IEP Enrichment
MF GO:0090482 vitamin transmembrane transporter activity IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR017941 Rieske_2Fe-2S 102 189
IPR013626 PaO 331 433
No external refs found!