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  5. Sro30_g019580.1

Sro30_g019580.1 (Contig3962.g30358)


Aliases : Contig3962.g30358

Description : Cluster assembly factor HCF101, chloroplastic


Gene families : OG_01_0000756 (OrthoFinder) Phylogenetic Tree(s): OG0000756_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro30_g019580.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000792.13 tig00000792_g4162.t1 Fe-S cluster assembly factor HCF101, chloroplastic... 0.02 OrthoFinder
Cre01.g045902 30789449 Coenzyme metabolism.iron-sulfur cluster assembly... 0.02 OrthoFinder
Cz04g32150.t1 No alias Flagellum site-determining protein YlxH/ Fe-S cluster... 0.02 OrthoFinder
OT_17G01440.1 No alias MIP18 family-like; Flagellum site-determining protein... 0.02 OrthoFinder
PTI_03G04130.1 No alias Flagellum site-determining protein YlxH/ Fe-S cluster... 0.02 OrthoFinder
SymbC1.scaffold4.1403 4.1403 Flagellum site-determining protein YlxH/ Fe-S cluster... 0.01 OrthoFinder
Vocar.0005s0314.1 32883681 Flagellum site-determining protein YlxH/ Fe-S cluster... 0.02 OrthoFinder
XM_002502600.1 MICPUN_58854, 58854 Flagellum site-determining protein YlxH/ Fe-S cluster... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497959.1_6912 KAA8497959 Fe-S cluster assembly factor 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004371 glycerone kinase activity IEP Enrichment
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Enrichment
BP GO:0006071 glycerol metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
BP GO:0019400 alditol metabolic process IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR033756 YlxH/NBP35 159 342
IPR002744 MIP18-like 71 141
IPR010376 GBBH-like_N 450 536
No external refs found!