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  5. Sro309_g113850.1

Sro309_g113850.1 (Contig3477.g26975)


Aliases : Contig3477.g26975

Description : WD repeat domain 85


Gene families : OG_01_0000287 (OrthoFinder) Phylogenetic Tree(s): OG0000287_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro309_g113850.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
EOD19266 No alias Zinc finger, C3HC4 type (RING finger) [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold2656.3 2656.3 Potassium channel tetramerisation-type BTB domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0051260 protein homooligomerization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003131 T1-type_BTB 12 97
No external refs found!