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  5. Sro307_g113190.1

Sro307_g113190.1 (Contig2839.g22789)


Aliases : Contig2839.g22789

Description : Helicase


Gene families : OG_01_0000030 (OrthoFinder) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro307_g113190.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Sro1137_g245270.1 Contig153.g1717 Hypothetical protein 0.03 OrthoFinder
Sro2923_g340340.1 Contig1756.g15591 Helicase 0.03 OrthoFinder
Sro471_g149700.1 Contig458.g6183 Helicase 0.04 OrthoFinder
Sro493_g154160.1 Contig1170.g11148 Helicase 0.03 OrthoFinder
Sro687_g187280.1 Contig4445.g33373 Helicase 0.03 OrthoFinder
SymbC1.scaffold7381.2 7381.2 Hypothetical protein 0.01 OrthoFinder
TP16G00390.1 No alias Helicase-associated [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
MF GO:0003796 lysozyme activity IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
MF GO:0008488 gamma-glutamyl carboxylase activity IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
BP GO:0016998 cell wall macromolecule catabolic process IEP Enrichment
BP GO:0017187 peptidyl-glutamic acid carboxylation IEP Enrichment
BP GO:0018200 peptidyl-glutamic acid modification IEP Enrichment
BP GO:0018214 protein carboxylation IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044036 cell wall macromolecule metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0061783 peptidoglycan muralytic activity IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005114 Helicase_assoc 13 70
IPR005114 Helicase_assoc 88 149
No external refs found!