1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro3058_g342900.1

Sro3058_g342900.1 (Contig2493.g20436)


Aliases : Contig2493.g20436

Description : Probable thiamine biosynthetic bifunctional enzyme, chloroplastic


Gene families : OG_01_0001017 (OrthoFinder) Phylogenetic Tree(s): OG0001017_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro3058_g342900.1
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020830.74 tig00020830_g14457.t1 No description available 0.01 OrthoFinder
lcl|LHPG02000016.1_cds_PRW33749.1_3182 PRW33749 Thiamine biosynthetic bifunctional enzyme chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070273 phosphatidylinositol-4-phosphate binding IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901981 phosphatidylinositol phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR013749 PM/HMP-P_kinase-1 13 268
IPR022998 ThiamineP_synth_TenI 371 547
No external refs found!