1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro298_g110990.1

Sro298_g110990.1 (Contig4399.g33030)


Aliases : Contig4399.g33030

Description : Regulator of chromatin subfamily A member 3-like 1


Gene families : OG_01_0000210 (OrthoFinder) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro298_g110990.1
Cluster HCCA: Cluster_342

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000378.31 tig00000378_g24522.t1 DNA repair protein RAD5A OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00021014.10 tig00021014_g17092.t1 DNA repair protein RAD5A OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz10g28060.t1 No alias SNF2-related, N-terminal domain; Zinc finger, C3HC4 type... 0.02 OrthoFinder
Dusal.0160s00016.1 33188321 RING-type zinc-finger, LisH dimerisation motif;... 0.02 OrthoFinder
Dusal.0215s00007.1 33185751 Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.01 OrthoFinder
EOD35283 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.01 OrthoFinder
Sro742_g195840.1 Contig1214.g11400 ISWI chromatin-remodeling complex ATPase ISW2 0.02 OrthoFinder
SymbC1.scaffold4407.7 4407.7 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_89503 89503 Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001332.1_cds_GFH18643.1_13120 HaLaN_15482, GFH18643 Helicase ATP-binding domain-containing protein 0.01 OrthoFinder
lcl|BLLF01001332.1_cds_GFH18644.1_13121 HaLaN_15483, GFH18644 ATP-dependent helicase rhp16 0.01 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492265.1_5448 KAA8492265 Putative SWI/SNF-related matrix-associated... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0030638 polyketide metabolic process IEP Enrichment
CC GO:0030915 Smc5-Smc6 complex IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0106068 SUMO ligase complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 235 574
IPR001841 Znf_RING 623 665
IPR014905 HIRAN 48 136
IPR001650 Helicase_C 708 821
No external refs found!