Sro2948_g340820.1 (Contig2871.g22977)


Aliases : Contig2871.g22977

Description : Dehydrosqualene desaturase


Gene families : OG_01_0002812 (OrthoFinder) Phylogenetic Tree(s): OG0002812_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2948_g340820.1
Cluster HCCA: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
OT_01G06030.1 No alias Amine oxidase [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment

No InterPro domains available for this sequence

No external refs found!