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  5. Sro2910_g340090.1

Sro2910_g340090.1 (Contig1382.g12705)


Aliases : Contig1382.g12705

Description : Splicing factor ATP-dependent RNA helicase


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2910_g340090.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
PTI_11G03860.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
Sro1496_g277510.1 Contig2419.g19801 Splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
Transcript_contig_67459 67459 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
Transcript_contig_89480 89480 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
XM_002500528.1 MICPUN_97165, 97165 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_002501417.1 MICPUN_58037, 58037 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_003057993.1 MicpuC2_57106, 57106 Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
XM_003057994.1 MicpuC2_57107, 57107 AAA+ ATPase domain; S1 domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.01 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20509.1_5500 PRW20509 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 957 1045
IPR001650 Helicase_C 767 895
IPR011709 DUF1605 1103 1179
IPR011545 DEAD/DEAH_box_helicase_dom 567 723
No external refs found!