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  5. Sro272_g104920.1

Sro272_g104920.1 (Contig2144.g18033)


Aliases : Contig2144.g18033

Description : Sigma factor RpoD


Gene families : OG_01_0000286 (OrthoFinder) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro272_g104920.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Dusal.0049s00001.1 33200334 RNA polymerase sigma-70 region 4; RNA polymerase... 0.01 OrthoFinder
XM_002501799.1 MICPUN_100150, 100150 RNA polymerase sigma-70 region 4; RNA polymerase... 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496639.1_368 KAA8496639 RNA polymerase sigma factor SigA 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 414 464
IPR007627 RNA_pol_sigma70_r2 232 301
IPR007624 RNA_pol_sigma70_r3 312 367
No external refs found!