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  5. Sro2671_g334310.1

Sro2671_g334310.1 (Contig3506.g27169)


Aliases : Contig3506.g27169

Description : Retrotransposon protein


Gene families : OG_01_0000121 (OrthoFinder) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2671_g334310.1
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Sro1045_g234990.1 Contig324.g4308 Hypothetical protein 0.03 OrthoFinder
Sro1587_g284220.1 Contig878.g9432 Retrotransposon protein 0.03 OrthoFinder
Sro168_g074640.1 Contig1642.g14795 Hypothetical protein 0.05 OrthoFinder
Sro1966_g308300.1 Contig1903.g16494 Hypothetical protein 0.05 OrthoFinder
Sro2219_g319590.1 Contig533.g6928 Hypothetical protein 0.05 OrthoFinder
Sro2815_g337740.1 Contig4348.g32793 Retrotransposon protein 0.02 OrthoFinder
Sro291_g109520.1 Contig4055.g31098 Hypothetical protein 0.02 OrthoFinder
Sro291_g109530.1 Contig4055.g31099 Hypothetical protein 0.05 OrthoFinder
Sro3043_g342690.1 Contig2893.g23072 Hypothetical protein 0.05 OrthoFinder
Sro3304_g346470.1 Contig606.g7512 Hypothetical protein 0.02 OrthoFinder
Sro494_g154220.1 Contig3119.g24787 Hypothetical protein 0.02 OrthoFinder
Sro66_g037090.1 Contig399.g5379 Retrotransposon protein 0.02 OrthoFinder
Sro730_g193960.1 Contig80.g828 Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!