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  5. Sro2627_g332970.1

Sro2627_g332970.1 (Contig3601.g27851)


Aliases : Contig3601.g27851

Description : Protein ligase ARIH1


Gene families : OG_01_0000507 (OrthoFinder) Phylogenetic Tree(s): OG0000507_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2627_g332970.1
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
PTI_31G00390.1 No alias IBR domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54525 54525 IBR domain [Interproscan]. 0.02 OrthoFinder
XM_002508933.1 MICPUN_87045, 87045 IBR domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019781 NEDD8 activating enzyme activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0045116 protein neddylation IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR002867 IBR_dom 960 1022
IPR002867 IBR_dom 1041 1080
No external refs found!