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  5. Sro2616_g332730.1

Sro2616_g332730.1 (Contig3376.g26420)


Aliases : Contig3376.g26420

Description : And CUL4-associated factor 13


Gene families : OG_01_0004098 (OrthoFinder) Phylogenetic Tree(s): OG0004098_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2616_g332730.1
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.67 tig00000615_g2597.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cre07.g318702 30774297 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder
Cz01g18250.t1 No alias WD40 repeat; Sof1-like protein [Interproscan]. 0.03 OrthoFinder
OT_12G01980.1 No alias Sof1-like protein; WD40 repeat [Interproscan]. 0.02 OrthoFinder
TP08G02260.1 No alias WD40 repeat; Sof1-like protein [Interproscan]. 0.05 OrthoFinder
Vocar.0003s0064.1 32889161 WD40 repeat; Sof1-like protein [Interproscan]. 0.04 OrthoFinder
XM_002507635.1 MICPUN_51754, 51754 WD40 repeat; Sof1-like protein [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001379.1_cds_GFH18918.1_13395 HaLaN_15793, GFH18918 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007287 Sof1 374 460
IPR001680 WD40_repeat 64 96
IPR001680 WD40_repeat 293 329
IPR001680 WD40_repeat 104 139
IPR001680 WD40_repeat 348 373
No external refs found!