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  5. Sro25_g017220.1

Sro25_g017220.1 (Contig1417.g13061)


Aliases : Contig1417.g13061

Description : Protein L7/L12


Gene families : OG_01_0000959 (OrthoFinder) Phylogenetic Tree(s): OG0000959_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro25_g017220.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020704.55 tig00020704_g13199.t1 50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea 0.03 OrthoFinder
Cre06.g293700 30779544, MRPL7 Protein biosynthesis.organelle translation... 0.03 OrthoFinder
Cre13.g581650 30784593, PRPL7 Protein biosynthesis.organelle translation... 0.08 OrthoFinder
Cz11g16290.t1 No alias Ribosomal protein L7/L12, C-terminal [Interproscan]. 0.02 OrthoFinder
Dusal.0477s00003.1 33196090 Ribosomal protein L7/L12, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD36893 No alias Ribosomal protein L7/L12, C-terminal; Ribosomal protein... 0.02 OrthoFinder
OT_04G04890.1 No alias Ribosomal protein L7/L12, C-terminal; Ribosomal protein... 0.06 OrthoFinder
PTI_08G00470.1 No alias Ribosomal protein L7/L12, C-terminal [Interproscan]. 0.02 OrthoFinder
PTI_08G00490.1 No alias Ribosomal protein L7/L12, C-terminal [Interproscan]. 0.03 OrthoFinder
Sro51_chlor_g030340.1 Rpl12 Rpl12 0.04 OrthoFinder
TP16G01760.1 No alias Ribosomal protein L7/L12, C-terminal [Interproscan]. 0.02 OrthoFinder
TPCG00690.1 No alias Ribosomal protein L7/L12, oligomerisation; Ribosomal... 0.04 OrthoFinder
XM_002504795.1 MICPUN_98038, 98038 Ribosomal protein L7/L12, C-terminal; Ribosomal protein... 0.07 OrthoFinder
XM_003060721.1 MicpuC2_19354, 19354 Ribosomal protein L7/L12, oligomerisation; Ribosomal... 0.05 OrthoFinder
lcl|BLLF01000770.1_cds_GFH14816.1_9293 HaLaN_10937, GFH14816 Ribosomal protein L7/L12, oligomerisation; Ribosomal... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005761 mitochondrial ribosome IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016289 CoA hydrolase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013823 Ribosomal_L7/L12_C 225 291
No external refs found!