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  5. Sro25_g016900.1

Sro25_g016900.1 (Contig1417.g13029)


Aliases : Contig1417.g13029

Description : Fucoxanthin-chlorophyll a-c binding protein


Gene families : OG_01_0003620 (OrthoFinder) Phylogenetic Tree(s): OG0003620_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro25_g016900.1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
EOD03973 No alias Light harvesting protein [Ensembl]. 0.06 OrthoFinder
EOD08021 No alias Light harvesting protein [Ensembl]. 0.1 OrthoFinder
EOD10741 No alias Light harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD15943 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD18782 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD21863 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD21878 No alias Light harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD22721 No alias Light harvesting protein [Ensembl]. 0.14 OrthoFinder
EOD23917 No alias Light harvesting protein [Ensembl]. 0.13 OrthoFinder
EOD35189 No alias Light harvesting protein [Ensembl]. 0.12 OrthoFinder
TP15G02070.1 No alias Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase;... 0.3 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
BP GO:0019684 photosynthesis, light reaction IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 43 214
No external refs found!