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  5. Sro256_g100540.1

Sro256_g100540.1 (Contig3587.g27699)


Aliases : Contig3587.g27699

Description : Polymerase epsilon subunit 3


Gene families : OG_01_0000661 (OrthoFinder) Phylogenetic Tree(s): OG0000661_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro256_g100540.1
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000057.46 tig00000057_g65.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder
Cpa|evm.model.tig00000704.54 tig00000704_g3341.t1 Nuclear transcription factor Y subunit B-3... 0.01 OrthoFinder
Cz10g08040.t1 No alias Transcription factor CBF/NF-Y/archaeal histone domain... 0.02 OrthoFinder
Cz10g24060.t1 No alias Transcription factor CBF/NF-Y/archaeal histone domain... 0.02 OrthoFinder
EOD23620 No alias Transcription factor CBF/NF-Y/archaeal histone domain... 0.01 OrthoFinder
EOD25995 No alias DNA polymerase epsilon catalytic subunit 3 [Ensembl]. 0.02 OrthoFinder
OT_04G05090.1 No alias Transcription factor CBF/NF-Y/archaeal histone domain... 0.02 OrthoFinder
OT_07G03550.1 No alias Transcription factor CBF/NF-Y/archaeal histone domain... 0.02 OrthoFinder
PTI_02G06180.1 No alias Transcription factor CBF/NF-Y/archaeal histone domain... 0.03 OrthoFinder
TP20G00510.1 No alias Transcription factor CBF/NF-Y/archaeal histone domain... 0.01 OrthoFinder
XM_002503573.1 MICPUN_60106, 60106 Transcription factor CBF/NF-Y/archaeal histone domain... 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003714 transcription corepressor activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005534 galactose binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
CC GO:0030008 TRAPP complex IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0032299 ribonuclease H2 complex IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 24 85
No external refs found!