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  5. Sro247_g098090.1

Sro247_g098090.1 (Contig3058.g24342)


Aliases : Contig3058.g24342

Description : GDT1-like protein 3


Gene families : OG_01_0000360 (OrthoFinder) Phylogenetic Tree(s): OG0000360_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro247_g098090.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000711.67 tig00000711_g3429.t1 Protein PAM71-homolog, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre17.g731300 30782456 GDT1-like protein 4 OS=Arabidopsis thaliana 0.01 OrthoFinder
Dusal.0032s00003.1 33186672 Gdt1 family [Interproscan]. 0.01 OrthoFinder
EOD18159 No alias Gdt1 family [Interproscan]. 0.01 OrthoFinder
TP11G01030.1 No alias Gdt1 family [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01005152.1_cds_GFH30798.1_25275 HaLaN_29718, GFH30798 GDT1 family protein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496007.1_2005 KAA8496007 GDT1-like protein 3 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR001727 Gdt1 255 328
IPR001727 Gdt1 95 168
No external refs found!