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  5. Sro2447_g327980.1

Sro2447_g327980.1 (Contig3072.g24490)


Aliases : Contig3072.g24490

Description : Pentacotripeptide-repeat region of PRORP; Protein-only RNase P, C-terminal [Interproscan].


Gene families : OG_01_0001305 (OrthoFinder) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2447_g327980.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
TP06G01770.1 No alias Hypothetical protein 0.02 OrthoFinder
XM_003062908.1 MicpuC2_52451, 52451 Protein-only RNase P, C-terminal;... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0090730 Las1 complex IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1902555 endoribonuclease complex IEP Enrichment
CC GO:1902911 protein kinase complex IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR031595 PRORP_C 461 600
IPR033443 PPR_long 171 311
IPR033443 PPR_long 45 100
No external refs found!