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  5. Sro239_g096030.1

Sro239_g096030.1 (Contig3063.g24399)


Aliases : Contig3063.g24399

Description : Protein ligase RNF181


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro239_g096030.1
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Dusal.0110s00028.1 33194367 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_04G01330.1 No alias PA domain; Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_15G03630.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_20G01460.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_22G02070.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492115.1_5298 KAA8492115 E3 ubiquitin-protein ligase SDIR1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0005200 structural constituent of cytoskeleton IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP Enrichment
BP GO:0018199 peptidyl-glutamine modification IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 294 338
IPR003137 PA_domain 200 271
No external refs found!