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  5. Sro234_g094380.1

Sro234_g094380.1 (Contig3223.g25485)


Aliases : Contig3223.g25485

Description : Fucoxanthin-chlorophyll a-c binding protein


Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro234_g094380.1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
EOD03774 No alias Light-harvesting family [Ensembl]. 0.01 OrthoFinder
EOD07752 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
EOD08157 No alias Light harvesting protein [Ensembl]. 0.18 OrthoFinder
EOD18950 No alias Light harvesting protein [Ensembl]. 0.18 OrthoFinder
EOD20809 No alias Light harvesting protein [Ensembl]. 0.01 OrthoFinder
EOD23225 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD24660 No alias Light harvesting protein [Ensembl]. 0.18 OrthoFinder
EOD25560 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD26056 No alias Light harvesting protein [Ensembl]. 0.14 OrthoFinder
EOD33861 No alias Light harvesting protein [Ensembl]. 0.12 OrthoFinder
EOD38541 No alias Light harvesting protein [Ensembl]. 0.01 OrthoFinder
OT_05G01810.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_02G04020.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.25 OrthoFinder
PTI_04G04620.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.26 OrthoFinder
PTI_07G04400.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_15G00600.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.26 OrthoFinder
PTI_15G00620.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.19 OrthoFinder
SymbC1.scaffold3903.3 3903.3 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
TP01G11130.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
TP05G03540.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.32 OrthoFinder
TP05G05630.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
TP09G03710.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.33 OrthoFinder
TP18G01450.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.31 OrthoFinder
TP19G02190.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001602.1_cds_GFH20248.1_14725 HaLaN_17338, GFH20248 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498066.1_7019 KAA8498066 Chlorophyll a-b binding protein of LHCII type III, chloroplastic 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499797.1_8750 KAA8499797 Chlorophyll a-b binding protein 1B-21, chloroplastic 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496609.1_338 KAA8496609 Chlorophyll a-b binding protein, chloroplastic 0.06 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8493980.1_3844 KAA8493980 Chlorophyll a-b binding protein 1B-21, chloroplastic 0.02 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492420.1_9113 KAA8492420 Chlorophyll a-b binding protein 1B-21, chloroplastic 0.02 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491490.1_6300 KAA8491490 Fucoxanthin-chlorophyll a-c binding protein, chloroplastic 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
BP GO:0019684 photosynthesis, light reaction IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 44 193
No external refs found!