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  5. Sro22_g015530.1

Sro22_g015530.1 (Contig426.g5777)


Aliases : Contig426.g5777

Description : Pol polyprotein


Gene families : OG_01_0000925 (OrthoFinder) Phylogenetic Tree(s): OG0000925_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro22_g015530.1

Target Alias Description ECC score Gene Family Method Actions
Sro1028_g233110.1 Contig2198.g18304 Retrotransposon protein 0.04 OrthoFinder
Sro240_g096120.1 Contig3315.g26010 Inherit from COG: Retrotransposon protein 0.03 OrthoFinder
Sro2664_g334090.1 Contig38.g226 Hypothetical protein 0.03 OrthoFinder
Sro3227_g345610.1 Contig1050.g10345 Inherit from COG: Retrotransposon protein 0.06 OrthoFinder
Sro326_g117930.1 Contig1080.g10481 Inherit from COG: Retrotransposon protein 0.05 OrthoFinder
Sro52_g031190.1 Contig3190.g25202 Inherit from COG: Retrotransposon protein 0.07 OrthoFinder
Sro788_g202490.1 Contig3902.g29930 Retrotransposon protein 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 23 77
IPR001584 Integrase_cat-core 81 170
No external refs found!