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  5. Sro229_g092990.1

Sro229_g092990.1 (Contig429.g5803)


Aliases : Contig429.g5803

Description : Meiotic recombination protein SPO11


Gene families : OG_01_0000800 (OrthoFinder) Phylogenetic Tree(s): OG0000800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro229_g092990.1
Cluster HCCA: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020902.41 tig00020902_g14994.t1 DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre02.g084800 30785864 DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana 0.03 OrthoFinder
EOD10080 No alias Hypothetical protein [Ensembl]. 0.04 OrthoFinder
EOD14427 No alias Type II DNA topoisomerase VI subunit A 2 [Ensembl]. 0.03 OrthoFinder
OT_05G00520.1 No alias Spo11/DNA topoisomerase VI, subunit A, N-terminal [Interproscan]. 0.05 OrthoFinder
Sro1153_g247050.1 Contig4473.g33620 Meiotic recombination protein SPO11-1 0.03 OrthoFinder
Transcript_contig_58286 58286 Spo11/DNA topoisomerase VI, subunit A, N-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000185.1_cds_GFH08808.1_3285 HaLaN_03835, GFH08808 Meiotic recombination protein SPO11 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006259 DNA metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
CC GO:0043625 delta DNA polymerase complex IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR013049 Spo11/TopoVI_A_N 235 295
No external refs found!