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  5. Sro2292_g322240.1

Sro2292_g322240.1 (Contig4369.g32901)


Aliases : Contig4369.g32901

Description : PAM71-homolog, chloroplastic


Gene families : OG_01_0000360 (OrthoFinder) Phylogenetic Tree(s): OG0000360_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2292_g322240.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021435.42 tig00021435_g21421.t1 GDT1-like protein 5 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
PTI_04G04580.1 No alias Gdt1 family [Interproscan]. 0.02 OrthoFinder
Sro17_g012440.1 Contig269.g3423 PAM71-homolog, chloroplastic 0.03 OrthoFinder
TP06G03120.1 No alias Gdt1 family [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004017 adenylate kinase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004325 ferrochelatase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001727 Gdt1 267 340
IPR001727 Gdt1 144 222
No external refs found!