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  5. Sro2289_g322140.1

Sro2289_g322140.1 (Contig3942.g30223)


Aliases : Contig3942.g30223

Description : Hypothetical protein


Gene families : OG_01_0000220 (OrthoFinder) Phylogenetic Tree(s): OG0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2289_g322140.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Sro116_g056940.1 Contig2228.g18470 ECF subfamily RNA polymerase sigma-24 subunit 0.04 OrthoFinder
Sro118_g057670.1 Contig2714.g21837 ECF subfamily RNA polymerase sigma-24 subunit 0.04 OrthoFinder
Sro1913_g305010.1 Contig2551.g20751 Domain protein 0.04 OrthoFinder
Sro257_g100830.1 Contig2018.g17262 Hypothetical protein 0.05 OrthoFinder
Sro2968_g341160.1 Contig2284.g18901 Hypothetical protein 0.05 OrthoFinder
Sro314_g115180.1 Contig2448.g20044 Inherit from NOG: cholinergic receptor, nicotinic 0.03 OrthoFinder
Sro379_g130440.1 Contig3398.g26561 Hypothetical protein 0.03 OrthoFinder
Sro459_g147260.1 Contig4657.g34666 Hypothetical protein 0.03 OrthoFinder
Sro459_g147280.1 Contig4657.g34668 ECF subfamily RNA polymerase sigma-24 subunit 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment

No InterPro domains available for this sequence

No external refs found!