1. Home
  2. Species
  3. Seminavis robusta
  4. Sequence
  5. Sro226_g092060.1

Sro226_g092060.1 (Contig565.g7178)


Aliases : Contig565.g7178

Description : Helicase


Gene families : OG_01_0000030 (OrthoFinder) Phylogenetic Tree(s): OG0000030_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro226_g092060.1
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Dusal.0950s00001.1 33199248 Helicase-associated [Interproscan]. 0.02 OrthoFinder
PTI_24G00770.1 No alias Helicase-associated [Interproscan]. 0.02 OrthoFinder
TP01G07410.1 No alias Hypothetical protein 0.02 OrthoFinder
TP02G02930.1 No alias Helicase-associated [Interproscan]. 0.02 OrthoFinder
TP03G07370.1 No alias Helicase-associated [Interproscan]. 0.03 OrthoFinder
TP05G00810.1 No alias Helicase-associated [Interproscan]. 0.02 OrthoFinder
TP18G01930.1 No alias Helicase-associated [Interproscan]. 0.03 OrthoFinder
TP22G01370.1 No alias Helicase-associated [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45545.1_1476 PRW45545 DEAD DEAH box helicase 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR005114 Helicase_assoc 437 497
IPR005114 Helicase_assoc 778 836
IPR005114 Helicase_assoc 583 640
IPR005114 Helicase_assoc 505 563
IPR005114 Helicase_assoc 1005 1060
IPR005114 Helicase_assoc 842 902
IPR005114 Helicase_assoc 652 712
No external refs found!