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  5. Sro2231_g320050.1

Sro2231_g320050.1 (Contig3905.g29947)


Aliases : Contig3905.g29947

Description : Putative ATP-dependent RNA helicase DHX30


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2231_g320050.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cre01.g051550 30788952 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder
XM_003054755.1 MicpuC2_45131, 45131 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
lcl|BLLF01003135.1_cds_GFH26457.1_20934 HaLaN_24609, GFH26457 Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 546 666
IPR011545 DEAD/DEAH_box_helicase_dom 278 448
IPR007502 Helicase-assoc_dom 747 854
No external refs found!