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  5. Sro2131_g315890.1

Sro2131_g315890.1 (Contig2224.g18465)


Aliases : Contig2224.g18465

Description : Factor TypA-like SVR3, chloroplastic


Gene families : OG_01_0000865 (OrthoFinder) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2131_g315890.1
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020614.28 tig00020614_g12138.t1 Putative elongation factor TypA-like SVR3, chloroplastic... 0.01 OrthoFinder
Cz13g04030.t1 No alias Elongation factor EFG, domain V-like; Translation... 0.01 OrthoFinder
EOD04480 No alias Putative mitochondrial elongation factor [Ensembl]. 0.04 OrthoFinder
OT_15G00430.1 No alias Translation elongation factor EFTu-like, domain 2;... 0.02 OrthoFinder
PTI_24G00400.1 No alias Transcription factor, GTP-binding domain; Elongation... 0.02 OrthoFinder
PTI_24G01750.1 No alias Elongation factor EFG, domain V-like; Transcription... 0.01 OrthoFinder
Vocar.0043s0017.1 32886915 Elongation factor EFG, domain V-like [Interproscan]. 0.01 OrthoFinder
XM_002503341.1 MICPUN_59663, 59663 Translation elongation factor EFTu-like, domain 2;... 0.03 OrthoFinder
lcl|BLLF01000888.1_cds_GFH15707.1_10184 HaLaN_11985, GFH15707 Tr-type G domain-containing protein 0.02 OrthoFinder
lcl|BLLF01002185.1_cds_GFH23064.1_17541 HaLaN_20616, GFH23064 Tr-type G domain-containing protein 0.01 OrthoFinder
lcl|BLLF01007041.1_cds_GFH32732.1_27209 HaLaN_32000, GFH32732 GTP binding protein TypA 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60987.1_244 PRW60987 GTP binding 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498234.1_7187 KAA8498234 Putative elongation factor TypA-like SVR3, chloroplastic 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495706.1_1704 KAA8495706 GTP-binding protein TypA/BipA-like 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
BP GO:0006077 (1->6)-beta-D-glucan metabolic process IEP Enrichment
BP GO:0006078 (1->6)-beta-D-glucan biosynthetic process IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000640 EFG_V-like 463 539
IPR000795 T_Tr_GTP-bd_dom 58 250
No external refs found!