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  5. Sro2100_g314500.1

Sro2100_g314500.1 (Contig2796.g22497)


Aliases : Contig2796.g22497

Description : Proteasome subunit beta type-3


Gene families : OG_01_0002457 (OrthoFinder) Phylogenetic Tree(s): OG0002457_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2100_g314500.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000826.22 tig00000826_g4591.t1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder
Cre06.g267500 30779119 Protein degradation.26S proteasome.20S core... 0.41 OrthoFinder
Cz09g20230.t1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.03 OrthoFinder
EOD15128 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.26 OrthoFinder
OT_01G05380.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.12 OrthoFinder
PTI_20G00550.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.35 OrthoFinder
TP19G02230.1 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.33 OrthoFinder
Vocar.0002s0175.1 32890691 Proteasome, subunit alpha/beta [Interproscan]. 0.05 OrthoFinder
XM_002508394.1 MICPUN_91802, 91802 Proteasome, subunit alpha/beta [Interproscan]. 0.11 OrthoFinder
XM_003062753.1 MicpuC2_22152, 22152 Proteasome, subunit alpha/beta [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01002803.1_cds_GFH25397.1_19874 HaLaN_23349, GFH25397 Proteasome subunit beta 0.01 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56889.1_9759 PRW56889 Proteasome subunit beta type-3-A 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497008.1_737 KAA8497008 Proteasome subunit beta type-3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 7 189
No external refs found!