Sro2078_g313630.1 (Contig3499.g27144)


Aliases : Contig3499.g27144

Description : 40S ribosomal protein S28


Gene families : OG_01_0003823 (OrthoFinder) Phylogenetic Tree(s): OG0003823_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2078_g313630.1
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.27 tig00000194_g14753.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cre12.g510450 30792329, RPS28 Protein biosynthesis.cytosolic ribosome.small subunit... 0.51 OrthoFinder
Cz13g13220.t1 No alias Ribosomal protein S28e [Interproscan]. 0.08 OrthoFinder
Dusal.0106s00013.1 33193490 Ribosomal protein S28e [Interproscan]. 0.02 OrthoFinder
EOD20419 No alias Ribosomal protein S28e [Interproscan]. 0.17 OrthoFinder
EOD23634 No alias Ribosomal protein S28e [Interproscan]. 0.17 OrthoFinder
OT_07G03760.1 No alias Ribosomal protein S28e [Interproscan]. 0.07 OrthoFinder
PTI_26G01600.1 No alias Ribosomal protein S28e [Interproscan]. 0.1 OrthoFinder
TP24G00120.1 No alias Ribosomal protein S28e [Interproscan]. 0.06 OrthoFinder
Vocar.0016s0208.1 32898111 Ribosomal protein S28e [Interproscan]. 0.07 OrthoFinder
XM_002507628.1 MICPUN_51733, 51733 Hypothetical protein (RPS28E) 0.02 OrthoFinder
XM_003056404.1 MicpuC2_64637, 64637 Ribosomal protein S28e (RPS28E) 0.07 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492075.1_5258 KAA8492075 40S ribosomal protein S28 0.07 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490545.1_5911 KAA8490545 40S ribosomal protein S28 0.24 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 4 69
No external refs found!