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  5. Sro201_g085130.1

Sro201_g085130.1 (Contig2914.g23182)


Aliases : Contig2914.g23182

Description : Tetratricopeptide repeat; MYND-like zinc finger, mRNA-binding [Interproscan].


Gene families : OG_01_0000887 (OrthoFinder) Phylogenetic Tree(s): OG0000887_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro201_g085130.1
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
Sro25_g017390.1 Contig1417.g13078 Hypothetical protein 0.03 OrthoFinder
Sro740_g195510.1 Contig168.g1890 MYND-like zinc finger, mRNA-binding [Interproscan]. 0.03 OrthoFinder
Sro927_g221190.1 Contig182.g2116 Zinc finger, MYND-type [Interproscan]. 0.04 OrthoFinder
Sro949_g223640.1 Contig3294.g25864 Hypothetical protein 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
InterPro domains Description Start Stop
IPR019734 TPR_repeat 130 157
IPR031615 Zfn-C6H2 36 69
No external refs found!