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  5. Sro2009_g310720.1

Sro2009_g310720.1 (Contig340.g4632)


Aliases : Contig340.g4632

Description : Protein ligase Arkadia


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro2009_g310720.1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001286.17 tig00001286_g8034.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00020943.22 tig00020943_g16264.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cz08g14050.t1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Cz09g32100.t1 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
Cz10g05080.t1 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
Cz12g01140.t1 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
Dusal.0652s00001.1 33198111 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
OT_10G02410.1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
PTI_10G01940.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold510.4 510.4 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
TP05G03820.1 No alias Zinc finger, RING-type [Interproscan]. 0.06 OrthoFinder
XM_002499639.1 MICPUN_54017, 54017 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
XM_003062145.1 MicpuC2_9885, 9885 Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45336.1_1274 PRW45336 E3 ubiquitin-ligase SDIR1 isoform X1 0.01 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494124.1_3988 KAA8494124 E3 ubiquitin-protein ligase ATL9 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492818.1_2554 KAA8492818 RING finger protein 24 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004357 glutamate-cysteine ligase activity IEP Enrichment
MF GO:0004363 glutathione synthase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006535 cysteine biosynthetic process from serine IEP Enrichment
BP GO:0006563 L-serine metabolic process IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006749 glutathione metabolic process IEP Enrichment
BP GO:0006750 glutathione biosynthetic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0009001 serine O-acetyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009070 serine family amino acid biosynthetic process IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
MF GO:0016412 serine O-acyltransferase activity IEP Enrichment
MF GO:0016413 O-acetyltransferase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Enrichment
BP GO:0019344 cysteine biosynthetic process IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0044550 secondary metabolite biosynthetic process IEP Enrichment
BP GO:0046937 phytochelatin metabolic process IEP Enrichment
BP GO:0046938 phytochelatin biosynthetic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 417 459
No external refs found!