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  5. Sro196_g083380.1

Sro196_g083380.1 (Contig3206.g25334)


Aliases : Contig3206.g25334

Description : Transport protein SEC24


Gene families : OG_01_0000893 (OrthoFinder) Phylogenetic Tree(s): OG0000893_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro196_g083380.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.3 tig00000829_g4645.t1 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder
Cre01.g035850 30788608, SEC24B Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 OrthoFinder
Cre02.g091150 30786099, SEC24A Vesicle trafficking.Coat protein II (COPII) coatomer... 0.07 OrthoFinder
Dusal.0045s00020.1 33191659 Zinc finger, Sec23/Sec24-type; Sec23/Sec24, trunk domain... 0.02 OrthoFinder
OT_11G02520.1 No alias Sec23/Sec24 beta-sandwich; Zinc finger,... 0.02 OrthoFinder
PTI_11G00980.1 No alias Gelsolin-like domain; Sec23/Sec24, helical domain;... 0.07 OrthoFinder
Vocar.0001s0725.1 32884529 Sec23/Sec24, trunk domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
Vocar.0001s1208.1 32884601 Zinc finger, Sec23/Sec24-type; Sec23/Sec24, helical... 0.02 OrthoFinder
XM_002508896.1 MICPUN_92170, 92170 Sec23/Sec24, helical domain; Sec23/Sec24, trunk domain;... 0.03 OrthoFinder
XM_003055317.1 MicpuC2_49909, 49909 Sec23/Sec24 beta-sandwich; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
XM_003061771.1 MicpuC2_28751, 28751 Gelsolin-like domain; Sec23/Sec24, helical domain;... 0.02 OrthoFinder
lcl|BLLF01000072.1_cds_GFH07062.1_1539 HaLaN_01811, GFH07062 COP-II coat subunit 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59573.1_6417 PRW59573 Transport Sec24-like protein 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60099.1_6260 PRW60099 Transport Sec24-like protein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496455.1_184 KAA8496455 Protein transport protein Sec24-like CEF 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008521 acetyl-CoA transmembrane transporter activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
MF GO:0042887 amide transmembrane transporter activity IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR006896 Sec23/24_trunk_dom 277 513
IPR006900 Sec23/24_helical_dom 614 729
IPR007123 Gelsolin-like_dom 772 823
IPR012990 Sec23_24_beta_S 519 603
IPR006895 Znf_Sec23_Sec24 206 240
No external refs found!