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  5. Sro1891_g303780.1

Sro1891_g303780.1 (Contig3442.g26775)


Aliases : Contig3442.g26775

Description : U2 snRNP component IST3


Gene families : OG_01_0004449 (OrthoFinder) Phylogenetic Tree(s): OG0004449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1891_g303780.1
Cluster HCCA: Cluster_313

Target Alias Description ECC score Gene Family Method Actions
Cre06.g280550 30778956 Zinc finger CCCH domain-containing protein 42... 0.02 OrthoFinder
Transcript_contig_79506 79506 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006595 polyamine metabolic process IEP Enrichment
BP GO:0006596 polyamine biosynthetic process IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
BP GO:0008216 spermidine metabolic process IEP Enrichment
BP GO:0008295 spermidine biosynthetic process IEP Enrichment
MF GO:0008376 acetylgalactosaminyltransferase activity IEP Enrichment
MF GO:0008410 CoA-transferase activity IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009309 amine biosynthetic process IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0032580 Golgi cisterna membrane IEP Enrichment
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 36 101
No external refs found!