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  5. Sro188_g081280.1

Sro188_g081280.1 (Contig1383.g12729)


Aliases : Contig1383.g12729

Description : RCC1 and BTB domain-containing protein 2


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro188_g081280.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020801.76 tig00020801_g13957.t1 No description available 0.01 OrthoFinder
OT_08G02470.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
PTI_19G00770.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
TP03G07260.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_79616 79616 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_002501055.1 MICPUN_67407, 67407 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_003055521.1 MicpuC2_37978, 37978 Regulator of chromosome condensation (RCC1) repeat;... 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497085.1_814 KAA8497085 Protein RCC2 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
CC GO:0030896 checkpoint clamp complex IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 540 583
IPR000408 Reg_chr_condens 432 482
IPR000408 Reg_chr_condens 226 274
No external refs found!