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  5. Sro17_g012260.1

Sro17_g012260.1 (Contig269.g3405)


Aliases : Contig269.g3405

Description : Proteasome subunit alpha type-1


Gene families : OG_01_0002071 (OrthoFinder) Phylogenetic Tree(s): OG0002071_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro17_g012260.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.21 tig00000217_g19154.t1 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase... 0.14 OrthoFinder
Cre06.g304300 30779553, POA6 Protein degradation.26S proteasome.20S core... 0.34 OrthoFinder
Cz08g17010.t1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.13 OrthoFinder
EOD07672 No alias Proteasome alpha-subunit, N-terminal domain [Interproscan]. 0.14 OrthoFinder
EOD17162 No alias Proteasome, subunit alpha/beta [Interproscan]. 0.06 OrthoFinder
PTI_08G04270.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.38 OrthoFinder
PTI_08G04350.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.37 OrthoFinder
SymbC1.scaffold4308.2 4308.2 Proteasome, subunit alpha/beta; Proteasome... 0.02 OrthoFinder
TP06G02620.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.3 OrthoFinder
Transcript_contig_58532 58532 Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.03 OrthoFinder
Vocar.0020s0163.1 32886732 Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.09 OrthoFinder
XM_002507301.1 MICPUN_55518, 55518 Proteasome subunit alpha type-1-b (PAF2) 0.02 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32598.1_4029 PRW32598 Proteasome subunit alpha type-1-B-like isoform A 0.05 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490914.1_6117 KAA8490914 Proteasome subunit alpha type-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEA Interproscan
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000426 Proteasome_asu_N 6 27
IPR001353 Proteasome_sua/b 29 217
No external refs found!