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  5. Sro1790_g297740.1

Sro1790_g297740.1 (Contig4724.g35072)


Aliases : Contig4724.g35072

Description : DExH-box ATP-dependent RNA helicase DExH7, chloroplastic


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1790_g297740.1
Cluster HCCA: Cluster_299

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.35 tig00000215_g18570.t1 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre03.g171650 30786928 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre06.g266416 30779154 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.01 OrthoFinder
Cz19g09190.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD09087 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
PTI_10G01300.1 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
TP15G01550.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.04 OrthoFinder
Vocar.0002s0213.1 32890657 Domain of unknown function DUF1605; DEAD/DEAH box... 0.02 OrthoFinder
Vocar.0034s0085.1 32893086 Helicase-associated domain; RWD domain; Domain of... 0.02 OrthoFinder
XM_002502784.1 MICPUN_82674, 82674 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_002507013.1 MICPUN_77912, 77912 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
lcl|BLLF01003135.1_cds_GFH26457.1_20934 HaLaN_24609, GFH26457 Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58696.1_7838 PRW58696 Helicase domain-containing 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011709 DUF1605 1577 1672
IPR001650 Helicase_C 1163 1297
IPR007502 Helicase-assoc_dom 1363 1509
IPR006575 RWD-domain 450 562
No external refs found!