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  5. Sro1741_g294660.1

Sro1741_g294660.1 (Contig4311.g32512)


Aliases : Contig4311.g32512

Description : Methylmalonyl-CoA mutase large subunit


Gene families : OG_01_0003578 (OrthoFinder) Phylogenetic Tree(s): OG0003578_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1741_g294660.1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
PTI_06G03890.1 No alias Cobalamin (vitamin B12)-binding domain;... 0.04 OrthoFinder
Transcript_contig_60213 60213 Cobalamin (vitamin B12)-binding domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60588.1_4324 PRW60588 Methylmalonyl-mitochondrial 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016866 intramolecular transferase activity IEA Interproscan
MF GO:0031419 cobalamin binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0005342 organic acid transmembrane transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008704 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0015129 lactate transmembrane transporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015718 monocarboxylic acid transport IEP Enrichment
BP GO:0015727 lactate transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015850 organic hydroxy compound transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR006158 Cobalamin-bd 645 762
IPR006099 MeMalonylCoA_mutase_a/b_cat 70 599
No external refs found!