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  5. Sro16_g011890.1

Sro16_g011890.1 (Contig916.g9626)


Aliases : Contig916.g9626

Description : WD repeat-containing protein 70


Gene families : OG_01_0003336 (OrthoFinder) Phylogenetic Tree(s): OG0003336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro16_g011890.1
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.40 tig00000704_g3327.t1 No description available 0.01 OrthoFinder
Cre04.g217750 30791183 No description available 0.02 OrthoFinder
Dusal.0250s00007.1 33198093 WD40 repeat [Interproscan]. 0.02 OrthoFinder
EOD23794 No alias WD40 repeat; Forkhead-associated (FHA) domain [Interproscan]. 0.01 OrthoFinder
OT_08G01670.1 No alias WD40 repeat [Interproscan]. 0.01 OrthoFinder
Transcript_contig_56539 56539 WD40 repeat [Interproscan]. 0.01 OrthoFinder
Vocar.0013s0267.1 32896210 WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_002503009.1 MICPUN_83229, 83229 WD40 repeat [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0042221 response to chemical IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044550 secondary metabolite biosynthetic process IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0046937 phytochelatin metabolic process IEP Enrichment
BP GO:0046938 phytochelatin biosynthetic process IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 294 326
IPR001680 WD40_repeat 391 424
IPR001680 WD40_repeat 196 223
IPR000253 FHA_dom 52 125
No external refs found!