- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Contig1709.g15280
Description : Extracellular solute-binding protein
Gene families : OG_01_0002026 (OrthoFinder) Phylogenetic Tree(s): OG0002026_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sro166_g074010.1 | |
| Cluster | HCCA: Cluster_64 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Sro1070_g237740.2 | No alias | Solute-binding protein family 3/N-terminal domain of... | 0.01 | OrthoFinder | |
| Sro1561_g282570.1 | Contig3759.g28828 | Putative amino-acid ABC transporter-binding protein YhdW | 0.05 | OrthoFinder | |
| Sro244_g097050.1 | Contig2788.g22421 | Extracellular solute-binding protein | 0.07 | OrthoFinder | |
| Sro2576_g331740.1 | Contig3418.g26640 | Putative amino-acid ABC transporter-binding protein YhdW | 0.04 | OrthoFinder | |
| Sro328_g118720.1 | Contig3574.g27627 | Extracellular solute-binding protein | 0.02 | OrthoFinder | |
| Sro400_g135110.1 | Contig1256.g11754 | Extracellular solute-binding protein | 0.06 | OrthoFinder | |
| Sro671_g184950.1 | Contig562.g7152 | Putative amino-acid ABC transporter-binding protein YhdW | 0.05 | OrthoFinder | |
| Sro729_g193760.1 | Contig1259.g11771 | Putative amino-acid ABC transporter-binding protein YhdW | 0.05 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Enrichment |
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Enrichment |
| MF | GO:0004673 | protein histidine kinase activity | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0007165 | signal transduction | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Enrichment |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Enrichment |
| CC | GO:0018995 | host cellular component | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| CC | GO:0033643 | host cell part | IEP | Enrichment |
| CC | GO:0033646 | host intracellular part | IEP | Enrichment |
| CC | GO:0033647 | host intracellular organelle | IEP | Enrichment |
| CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0035556 | intracellular signal transduction | IEP | Enrichment |
| CC | GO:0042025 | host cell nucleus | IEP | Enrichment |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Enrichment |
| BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
| BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0065007 | biological regulation | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| MF | GO:0140110 | transcription regulator activity | IEP | Enrichment |
| MF | GO:0140299 | small molecule sensor activity | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001638 | Solute-binding_3/MltF_N | 286 | 491 |
| No external refs found! |