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  5. Sro1642_g288060.1

Sro1642_g288060.1 (Contig4503.g33764)


Aliases : Contig4503.g33764

Description : Histone H3


Gene families : OG_01_0000015 (OrthoFinder) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro1642_g288060.1
Cluster HCCA: Cluster_303

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264650 30779911, HTR27 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g265000 30778874 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g265250 30779294 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g265500 30778907 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g266650 30779741 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g267950 30779543, HTR10 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre06.g268350 30778762, HTR9 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g274000 30779747, HTR7 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre06.g274101 30779608 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre06.g274350 30778588, HTR29 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre06.g274850 30778497 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre06.g275750 30779137 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre06.g276600 30779595 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g276850 30778983, HTR24 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre12.g504650 30791932 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre12.g504800 30793536, HTR16 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre12.g505500 30793498, HTR17 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre12.g506300 30792290, HTR18 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre12.g506500 30792666, HTR35 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre13.g569950 30784075, HTR2 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre16.g649900 30777869, HTR40 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre16.g650300 30777639, HTR39 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre17.g708150 30782647, HTR36 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre17.g708700 30782453, HTR20 Chromatin organisation.histones.H3-type histone 0.06 OrthoFinder
Cre17.g709050 30782593, HTR3 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cz05g04150.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz07g08150.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
Cz08g27160.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz13g04210.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
Cz18g11080.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.05 OrthoFinder
Dusal.0093s00026.1 33185350 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Dusal.0093s00033.1 33185318 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Dusal.0152s00018.1 33186215 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Dusal.0165s00022.1 33193361 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Dusal.0322s00002.1 33197807 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Dusal.0482s00002.1 33186429 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Dusal.0658s00002.1 33202429 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Dusal.0806s00005.1 33190346 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Dusal.1067s00005.1 33188990 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Dusal.1079s00002.1 33193518 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD22942 No alias Putative histone H3 [Ensembl]. 0.03 OrthoFinder
EOD31711 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD33509 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD34125 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
OT_11G02230.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
PTI_06G03830.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
PTI_06G03900.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro69_g038380.1 Contig4677.g34747 Histone H3 0.04 OrthoFinder
TP03G01210.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0595.1 32891186 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0006s0183.1 32894260 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Vocar.0028s0150.1 32895676 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
XM_003059175.1 MicpuC2_27286, 27286 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
XM_003061662.1 MicpuC2_48264, 48264 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
XM_003061708.1 MicpuC2_48289, 48289 Histone H3 0.02 OrthoFinder
lcl|BLLF01000167.1_cds_GFH08542.1_3019 HaLaN_03522, GFH08542 Histone domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!